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Could quantitative real-time polymerase chain reaction assay serve as an alternative test method to evaluate human epidermal growth factor receptor 2 status of gastric carcinoma in the South Asian setting?

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dc.contributor.author Kannangara, D.K.S. en
dc.contributor.author Lokuhetty, M.D.S.
dc.contributor.author Subasinghe, D.
dc.contributor.author Gunawardene, Y.I.N.S.
dc.contributor.author Dassanayake, R.S.
dc.date.accessioned 2019-08-20T10:30:17Z
dc.date.available 2019-08-20T10:30:17Z
dc.date.issued 2019
dc.identifier.citation Indian Journal of Gastroenterology.2019; 38(4):317-324 [Epub ahead of print] en_US
dc.identifier.issn 0254-8860 (Print)
dc.identifier.issn 0975-0711 (Electronic)
dc.identifier.uri http://repository.kln.ac.lk/handle/123456789/20351
dc.description indexed in MEDLINE en_US
dc.description.abstract BACKGROUND:Human epidermal growth factor receptor 2 (HER2) protein overexpression and/or HER2 gene amplification are/is linked to a dismal outcome of gastric carcinoma (GCa). Immunohistochemistry (IHC) and fluorescence in situ hybridization (FISH) are key methods to identify patients for HER2 targeted therapy. Drawbacks of both the methods warrant novel tests. Hence, we evaluated the value of quantitative real-time polymerase chain reaction (qPCR) as an alternative test method, relative to IHC to detect HER2 status of GCa and to find relationship between these results with demographic/clinicopathological data.METHOD:Twenty GCa patients with known IHC HER2 scores were evaluated. qPCR was performed for the HER2 gene and amyloid precursor protein (reference gene) in formalin-fixed paraffin-embedded GCa tissue. Cycle threshold values (Ct) were analyzed using the Pfaffl method to detect HER2 gene amplification.RESULTS:HER2 positivity rates by IHC and qPCR were 20% and 35%, respectively. The sensitivity and specificity of qPCR were 67% and 76%, respectively, relative to IHC. qPCR results were reproducible. The diagnostic consistency between IHC and qPCR (κ = 0.146) was slightly agreeable (0.01 < k < 0.20), with a 65% concordance. Based on McNemar's test, there was no significant difference between the results of the two tests. IHC HER2 protein expression had relationship with the tumor (TNM) stage and Lauren histological type (p < 0.05). Positive HER2 gene expression by qPCR showed relationship with depth of invasion, lymph node involvement, and degree of differentiation (p < 0.05).CONCLUSION:Cost-effective qPCR could serve as an alternative test method for detection of HER2 status of GCa. Both HER2 overexpression by IHC and gene amplification by qPCR are associated with adverse clinicopathological features en_US
dc.language.iso en en_US
dc.publisher Indian Society of Gastroenterology/Springer India en_US
dc.subject Gastric carcinoma en_US
dc.title Could quantitative real-time polymerase chain reaction assay serve as an alternative test method to evaluate human epidermal growth factor receptor 2 status of gastric carcinoma in the South Asian setting? en_US
dc.type Article en_US


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