Medicine
Permanent URI for this communityhttp://repository.kln.ac.lk/handle/123456789/12
This repository contains the published and unpublished research of the Faculty of Medicine by the staff members of the faculty
Browse
19 results
Search Results
Item Use of antimicrobials in obstetric practice – A Narrative review(Sri Lankan Society for Microbiology, 2020) Patabendige, M.; Herath, R.P.; Athulathmudali, S.R.; Wijesooriya, W.R.P.L.I.ABSTRACT: Improvement of the outcome of infectious diseases by early and appropriate antimicrobial therapy is of paramount importance in any clinical discipline. Special considerations need to be given for the use of antimicrobial agents in obstetric practice, as it relates to the safety of both the mother and the fetus. However, their use and misuse are associated with significantly increasing antibiotic resistance. The objective of this review was to provide a useful overview for the practicing obstetrician, of current recommendations for the use of antibiotics in common situations related to pregnancy and the postpartum period. KEYWORDS: Antibiotic use, Obstetrics, Maternal health, Sepsis in pregnancy, Postpartum sepsis.Item Detection, identification, and antimicrobial susceptibility of Campylobacter spp. and Salmonella spp. fromfree-ranging Nonhuman Primates in Sri Lanka(Wildlife Disease Association, 2019) Tegner, C.; Sunil-Chandra, N.P.; Wijesooriya, W.R.P.L.I.; Perera, B.V.; Hansson, I.; Fahlman, A.ABSTRACT: Infections with Campylobacter spp. and Salmonella spp. are the most frequently reported causes of human bacterial enteritis. Warm-blooded animals, including livestock, pets, and wildlife, can be carriers of the bacteria and may contaminate the environment and food products. The present study investigated the occurrence of Campylobacter spp. and Salmonella spp. in fecal pat samples from free-ranging toque macaques (Macaca sinica) and tufted gray langurs (Semnopithecus priam) collected in March-May 2015 in Sri Lanka. In 58 samples from toque macaques, Campylobacter jejuni was isolated in 10 (17%), Campylobacter coli in four (7%), and Salmonella enterica subsp. enterica serovar Virchow in two (3%). None of the bacteria were isolated in the 40 samples from tufted gray langurs. Pulse-field gel electrophoresis and multilocus sequence typing identified six profiles and four clonal complexes of C. jejuni. The isolated Campylobacter spp. showed varying susceptibility to antimicrobial substances. All Campylobacter spp. isolates were susceptible to chloramphenicol, erythromycin, florfenicol, gentamicin, and streptomycin. Four of the C. jejuni were resistant to at least one of the following: ampicillin, ciprofloxacin, nalidixic acid, and tetracycline, and one of the isolates was multidrug resistant. All four C. coli were resistant to ampicillin, whereas the two Salmonella Virchow strains were susceptible to all antibiotics tested. The presence of Campylobacter spp. and Salmonella spp. in toque macaques may have an impact on the conservation of endangered primates and public health in Sri Lanka. KEYWORDS: Campylobacter spp .; Antimicrobial resistance; PFGE; Salmonella spp; conservation; nonhuman primates.Item Comparison of Three Carbapenemase Producing Enterobacteria (CPE) Detection Methods(19th Conference on Postgraduate Research, International Postgraduate Research Conference 2018, Faculty of Graduate Studies,University of Kelaniya, Sri Lanka, 2018) Kumudunie, W.G.M.; Wijayasinghe, Y.S.; Wijesooriya, W.R.P.L.I.; Sunil-Chandra, N.P.; Namalie, K.D.Introduction: The emergence of carbapenem resistant enterobacteria (CRE) is a critical and growing health threat, causing a failure of almost all the available antibiotics and limiting the effective therapeutic options. CRE has been reported all over the world including Sri Lanka. The carbapenem resistance in enterobacteria is mainly occurred due to the production of carbapenemases, the carbapenem inactivating enzymes. Therefore, accurate and timely detection of CPE is an important aspect to streamline the empiric antibiotic therapy. In this study, three CPE detection methods namely, Carba NP-rapid biochemical test, modified carbapenem inhibition method (MCIM) and modified Hodge test (MHT) were compared for the detection of CPE. Carba NP test is a rapid biochemical test that requires 2 hours or less. However, both MCIM and MHT require incubation of 18 – 24 hours. Objective: To compare theCarba NP-rapid biochemical test with the MCIM and MHT for the detection of CPE. Methodology: Fifty-eight clinically significant CRE isolates were recovered from clinical specimens from patients attended to North Colombo Teaching Hospital (NCTH)during December 2017 – February 2018. Antibiotic sensitivity testing for the screening of CRE was performed according to Clinical and Laboratory Standards Institute (CLSI) guidelines. Enterobacteria, resistant to at least one carbapenem antibiotic were considered as CRE. Carba NP test, MCIM and MHT were carried out for CRE isolates according to the CLSI guidelines. Statistical analysis was done using R programming language (level of significance P<0.05). Results: Of 58 CRE, 94.82% (55/58) were confirmed as CPE via both MCIM and MHT while 77.58% (45/58) were revealed as CPE by Carba NP test. There was a significant reduction of CPE detection by Carba NP method compared to MCIM and MHT(P=0.007). Conclusion: Of the three CPE detection methods, sensitivity was higher in MCIM and MHT compared to Carba NP – rapid biochemical test. Acknowledgement: Financial assistance by National Research Council, Sri Lanka (NRC 17-055) is acknowledged.Item Antimicrobials in Gynaecological practice(Sri Lanka college of Obstetricians & Gynaecologists, 2017) Patabendige, M.; Herath, R.P.; Wijesooriya, W.R.P.L.I.Surgical site infections are a common complication of Gynaecological surgeries. Up to 8-10% of Gynaecological patients undergoing an operative procedure will develop a surgical site infection. In surgeries with high rates of post-operative infection, antibiotic prophylaxis can play a major role in improving outcomes. In addition there are many indications where antimicrobial treatment is necessary in day-to-day Gynaecological practice. This review summarizes the available medical literature to assess the indications and appropriate antimicrobials for common circumstances in Gynaecological practice.Item Antibiotic sensitivity pattern for non-beta lactam antibiotics and carbapenems in extended-spectrum beta-lactamase (ESBL) producing uropathogens versus non-ESBL producing uropathogens(Sri Lankan Society for Microbiology, 2017) Wijesooriya, W.R.P.L.I.; Herath, Y.B.; Sugandhi, R.A.I.; Weerawardhana, A.; Ediriweera, D.S.INTRODUCTION AND OBJECTIVES: Urinary tract infections (UTIs) are frequent and predominantly caused by coliforms. ESBL producers are increasing in number limiting therapeutic options. It is therefore vital to institute precise, empiric antibiotic guidelines in order to prevent life-threatening urosepsis. The objective of this study was to compare antibiotic sensitivity (ABST) pattern of ESBL producers and non-ESBL producers against selected non-beta lactams and carbapenem antibiotics. METHODOLOGY: Retrospective analysis of ABST of significant urinary coliform isolates was done. STUDY SETTING: Department of Medical Microbiology, Faculty of Medicine, University of Kelaniya and Base Hospital, Wathupitiwala, Sri Lanka. STUDY PERIOD: 01.01.2012 - 01.01.2016. STUDY GROUPS: ESBL producers and non-ESBL producers, 63 in each group. Sensitivity profiles of amikacin, gentamicin, netilmicin, nitrofurantoin, nalidixic acid, norfloxacin, ciprofloxacin, imipenem and meropenem were analyzed. Statistical analysis: R programming language. Level of significance P<0.05. RESULTS: ESBL producers were present in 63 patients, 36 (57.1%) of whom were females and 39 were inpatients (61.9%). Non-ESBL producers were isolated from urine of 63 patients, of whom 49 (77.8%) were females and 17 (26.9%) inpatients. Antibiotic sensitivity of ESBL producers ranged from 82.2% to 100% for netilmicin, amikacin, meropenem and imipenem, 65% for nitrofurantoin and from 14.8% to 32.1% for nalidixic acid, ciprofloxacin, norfloxacin and gentamicin. Antibiotic sensitivity of the non-ESBL producers ranged from 56.7% for nalidixic acid and from 76.8% to 85.1% for ciprofloxacin, nitrofurantoin, norfloxacin and gentamicin. CONCLUSION: A female predominance was noted in both non ESBL and ESBL producers but there was a significant dominance of ESBL producers in male patients. ESBL producers were significantly common amongst inpatients than outpatients. ESBL-producers had significantly high resistance against nalidixic acid, ciprofloxacin, norfloxacin and gentamicin compared to non-ESBL producers. However, more than 2/3rd of isolates in both groups were sensitive to nitrofurantoin.Item Enteric pathogens of zoonotic concern in non-human primates in Sri Lanka(European Wildlife Disease Association (EWDA, 2016) Tegner, C.; Sunil-Chandra, N.P.; Ingrid, H.; Perera, V.; Wijesooriya, W.R.P.L.I.; Fahlman, A.Zoonotic disease is a two-way street where humans and other animals are interchanging pathogens. We investigated the occurrence of the potentially zoonotic Campylobacter spp., Salmonella spp. and group A rotaviruses in faecal samples from free-ranging toque macaques and tufted gray langurs in Sri Lanka. Samples were opportunistically collected from primate troops with close human contact at five sites. Standardized culturing was used to detect the bacteria and an ELISA-based dipstick test was used for detection of group A rotaviruses antigens. Genotyping was performed using pulse field gel electrophoresis (PFGE) and multi-locus sequence typing (MLST) and the isolates' sensitivity to selected antibiotics was tested with VetMIC TM (National Veterinary Institute, Uppsala, Sweden) panels Camp EU, CLIN GN and GN-mo (version 4). All 98 samples tested negative for rotavirus. The 40 samples from gray langurs were also all negative for Campylobacter spp. and Salmonella spp. Of the 58 samples collected from toque macaques, C. jejuni was isolated from ten, C. coli from four and Salmonella enterica enterica subsp. Virchow from two of the samples. The fact that neither of the bacteria were isolated from tufted gray langur samples could reflect a true difference between the primate species. However, this should be interpreted in the light of a relatively small sample size. Resistance to ampicillin, ciprofloxacin, nalidixic acid and tetracycline was identified in four C. jejuni isolates, of which three were multidrug resistant. In addition, all C. jejuni showed undetectable MIC-values to colistin, while all C. coli were sensitive to the substance. All C. coli were resistant to ampicillin. The S. Virchow isolates were sensitive to all antibiotics tested for. Six strains of C. jejuni were identified using PFGE and MLST clonal complexes were assigned to all isolates. Sequence types were assigned to seven out of ten C. jejuni. The detection of antibiotic resistant zoonotic bacteria in free-ranging toque macaques with close human contact may have implications for both non-human primate conservation and public health in Sri Lanka and beyondItem Novel PCR for Mycoplasma pneumoniae detection in specimens from patients with various types of respiratory infections(Sri Lanka College of Microbiologists, 2010) Wijesooriya, W.R.P.L.I.; Kok, T.W.; Perera, J.INTRODUCTION: M. pneumoniae is the causative agent of primary atypical pneumonia and causes 20-40% of community acquired pneumonia. Patients mount IgM and IgG antibody responses, which provide useful diagnostic markers. IgM antibodies are not always produced in adults upon reinfection. Specific IgG antibodies increase slowly during the course of illness. Hence, test interpretation needs paired-serum which is not user friendly. Use of molecular diagnostic methods will overcome these. OBJECTIVE: To develop novel PCR primers to detect M. pneumoniae. METHODOLOGY: New forward and reverse primers which exclusively amplify M. pneumoniae-DWk encoding P1 adherent protein were developed. Master mix consisted of distilled water, 25mM-Mgcl2, 10X-PCR-Buffer, 10mM-dNTPS, two primers (10-p.M-Mpn-S (0.50p.M), 10-y.M-Mpn-RS (0.50|iM)) and Taq-Gold (5U/pJ). Purified M. pneumoniae- DNA (M129-B7-ATCC-29342) (20pg/ I) was used to determine PCR sensitivity. Detection limit was expressed as M. pneumoniae-DNA copy number. Each test had positive and negative controls. Specificity of PCR was evaluated using blast search. In addition, specificity was checked in the laboratory by doing the M. pneumoniae PCR with S. pneumoniae, H. influenzae and S. aureus (common respiratory pathogens causing pneumonia) and no positive reactions were observed among them. RESULTS: Limit of detection of M.pneumoniae-PCR was 400 fg of DNA which is equivalent to 10 copies per45pl of reaction mix. Specificity of the designed primer sequences was 100% with GenBank blast search and no cross reactions were observed with other respiratory-pathogens. M.pneumoniae-DNfltwas detected in 52% (13/25) of sero¬logy confirmed (positive IgM +/ IgG seroconversion) cases. CONCLUSION: Novel M. pneumoniae PCR has a sensitivity of 52% when tested with serology confirmed cases and a specificity of 100% when tested against other common respiratory pathogens. Detection limit was 10 copies / 45 pi of reaction mix.Item The use of serology and PCR in the diagnosis of Mycoplasma pneumoniae(Sri Lanka College of Microbiologists, 2010) Wijesooriya, W.R.P.L.I.; Kok, T.W.; Perera, J.; Thilakarathna, Y.; Sunil-Chandra, N.P.INTRODUCTION: M. pneumoniae is the causative agent of primary atypical pneumonia. Patients mount IgM and IgG antibody responses, which are useful diagnostic markers. Tests for specific DNA by polymerase chain reaction (PCR) in respiratory samples offer rapid and highly sensitive detection for M. pneumoniae diagnosis. AIM: To determine the relationship between serology and PCR in the diagnosis of M. pneumoniae inpatients with respiratory tract infections and a control group. METHODOLOGY: Paired sera from 418 adult patients were enrolled (pneumonia - 97, acute bronchitis -183, acute pharyngitis -138). The control group consisted of 87 paired sera from patients without acute respiratory infections. Isotype specific (IgM, IgG) antibodies were tested by M. pneumoniae specific ELISA (IBL-Hamburg-Germany). PCR for M. pneumoniae DNA was done in respiratory samples of serologically positive and age and gender matched serologically negative patients. RESULTS: M. pneumoniae specific IgG was seen in 9.3% (9/97), 5.4% (10/183) and 1.5% (2/138) in patients with pneumonia, acute bronchitis and pharyngitis respectively. IgM was seen in 4.1 % (4/97) and 2.1 % (2/183) and 0% (0/138) respectively. Both IgM and IgG were observed only in patients with pneumonia (2.1% (2/97)). M. pneumoniae DNA was detected in 52% (13/25) of serology confirmed and 15% (4/26) of serology negative cases. CONCLUSION: M. pneumoniae specific DNA was detected in both serologically positive and negative cases. These discordant results showed that with M. pneumoniae infection, both serology and PCR tests should be performed to maximize diagnosis.Item Teicoplanin non-susceptible coagulase-negative staphylococci in a large Australian healthcare network: Implications for treatment with vancomycin(Sri Lankan Society for Microbiology, 2017) Wijesooriya, W.R.P.L.I.; Kotsanas, D.N.; Korman, T.M.; Graham, M.INTRODUCTION AND OBJECTIVES: Coagulase-negative staphylococci (CoNS) are relatively low in virulence but some are increasingly recognized as agents of clinically important infections. Glycopeptides are the drugs of choice for treatment of methicillin-resistant CoNS infections. Our aim was to analyse the susceptibility profile of CoNS in our healthcare network from 2010-2012. METHODS: All CoNS with susceptibility results were analysed as two groups; teicoplanin-susceptible (Teico-S) and non–susceptible (Teico-NS). Analysis included results of other antistaphylococcal antibiotic susceptibilities, sample type (sterile, non-sterile), species and patient location (intensive care unit (ICU) vs non-ICU). RESULTS: Of the 1510 CoNS isolates with susceptibility results, 109 (7.2%) were non-susceptible to teicoplanin. Teicoplanin non-susceptibility was associated with non-susceptibility to ≥ 3 antistaphylococcal-antibiotics, detected more frequently from sterile samples compared to non-sterile samples and from ICU compared to ward patients. Staphylococcus epidermidis was the most common species recovered and was more likely to be Teico-NS. CONCLUSIONS: Teicoplanin non-susceptibility is associated with multi-resistance to ≥3 antistaphylococcal antibiotics. Clinicians should be aware that vancomycin resistance may be selected from Teico-NS strains.Item Prevalence of antibodies to herpes simplex virus types 1 and 2 (hsv-1 and hsv-2) Amongst non-high risk and High risk populations in Sri Lanka(Sri Lanka College of Microbiologists, 2001) Sunil-Chandra, N.P.; Kumarage, J.; Wijesooriya, W.R.P.L.I.; Jayasinghe, S.M.A.S.INTRODUCTION: HSV-1 and HSV-2 infects both the ora cavity and the genital tract whilst the HSV-i generally causes genital infection. Both c these human herpesviruses cause botl primary and recurrent infections leading ft a lifelong persistence of antibodies. Mol infections of either type are asymptomatic Detection of type specific antibodies hai important implications in the diagnosis of HS' infection in sexually active adults ar> prevention of mother to child transmissiof Recently, problems associated with commo epitopes which elicit cross reactiv antibodies in infected individuals have bee overcome by new HSV type specif! serological assays using the gG1 protein < HSV-1 and gG-2 of HSV-2 as antigens. Th study determine the burden and the epidemiology of type specific HSV infection amongst Sri Lankan populations. OBJECTIVE: To estimate and compare age and gender specific seroprevalences of HSV-1 and HSV-2 amongst non-high risk and high risk populations from Sri Lanka. DESIGN: A prospective study among selected target groups. Setting: Children (aged 1-12 years) and non-high risk adults (aged 13-89 years) and blood donors (aged 15-54 years) reported to Teaching Hospital, Ragama, expectant mothers (aged 14-44 years) of Kelaniya Medical Officer of Health (MOH) division, and the patients attended Central STD Clinic Colombo (aged 4-79 years) during the years 2000 and 2001 were included in this study. METHODS: Single sample of blood was obtained from each of 433 children, 757 ante-natal women, 1374 non-high risk adults, 929 blood donors, and 676 STD clinic attendees. Samples were tested for IgG class antibody responses to HSV infections using FDA approved type specific ELISA assay (MRL) at the Dept . of Microbiology, Faculty of Medicine , University of Kelaniya. RESULTS: Overall seroprevalence of HSV-1 among children, ante-natal women, blood donors, adult patients and STD attendees was 51.3%, 75.2%, 79.3%, 75.9% and 78.7% respectively whilst the seroprevalence of HSV-2 was 4.6%, 8.3%, 10.9%, 19.8% and 39.6% respectively. Age and gender specific differences in seroprevalence were observed within study groups.