International Postgraduate Research Conference (IPRC)

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Author: search.filters.author.Wanigatunge, R.P.Has files: Yes

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    Culture-Dependent Characterization of Marine Bacteria from Ussangoda Coast, Sri Lanka
    (International Postgraduate Research Conference 2019, Faculty of Graduate Studies, University of Kelaniya, Sri Lanka, 2019) Hettiarachchi, H.H.; Wanigatunge, R.P.; Magana-Arachchi, D.N.
    Marine bacteria play a vital role in marine ecosystem structure and ocean biogeochemistry. Ussangoda has identified as a serpentinite site, situated along the Southern coastal zone of Sri Lanka. In the past, few studies have focused on biodiversity and soil chemistry of this unique habitat. However, marine bacterial diversity in the Ussangoda coast is largely unexplored. Thus, the present study was conducted to isolate and identify marine bacteria in Ussangoda coast. Water, sand and soil samples were collected from 14 sites of the beach which were located approximately 1 m distance representing foreshore, shore line, backshore and upland. Bacteria were isolated by inoculating a 10 μl of each water sample, soil and sand suspension into tryptone soya agar, nutrient agar (NA), and seawater nutrient agar (SNA) and were incubated at 27 ± 2 oC for 3 days. Pure cultures were obtained after 1-2 consecutive sub-culturing on to fresh media plates by streaking. In order to obtain halophilic bacteria, isolates were inoculated into saline nutrient agar media with the concentrations of 10% and 20% of NaCl for moderate halophiles and extreme halophiles respectively and were incubated at 27 ± 2 oC for 7 days. 198 bacterial pure cultures were initially isolated and among them 152 were Gram-positive bacteria (76.8%). Based on colony morphology and Grams’ staining, bacterial isolates were identified as Bacillus, Staphylococcus, Micrococcus, Pseudomonas, Klebsiella, Escherichia coli and Stenotrophomonas,which have been previously reported in coastal zones of other countries. Among the tested 102 isolates, 35 isolates (34%) were reported as moderately halophilic and 14 isolates (13%) were reported as extremely halophilic bacteria. Halophilic bacteria were recorded from shoreline as well as in the upland soil and it may be due to the soil chemistry of the area. Bacterial isolates should be further confirmed by the 16S rDNA sequencing to confirm their identity. This study provides foundational data on the microbial diversity of the Ussangoda coast and further studies are needed to identify the association of microbial community structure with the environmental factors in this region.
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    Identification and Disease Assessment of Begomovirus Infecting Capsicum frutescens (Kochchi) in Minuwangoda, Sri Lanka
    (International Postgraduate Research Conference 2019, Faculty of Graduate Studies, University of Kelaniya, Sri Lanka, 2019) Jayathilaka, S.A.S.D.; Wanigatunge, R.P.; Attanayake, R.N.; Edirisinghe, P.
    Leaf curl of Capsicum frutescens (Kochchi) is a common problem in many Capsicum growing regions of the country including Minuwangoda area in Gampaha. Water stress, poor soil drainage or viral infection are some of the potential causes of leaf curl. The main aim of the current study was to determine whether the leaf curl of Minuwangoda area is due to viral infection and to determine the disease severity and incidence of the region. A disease assessment key graded from 0 to 6 was developed for CLC disease of C. frutescens. Thirtytwo C. frutescens fields having more than 50 plants per field were selected. Disease symptoms, incidence and severity were recorded. Prominent symptoms of the disease were leaf curling, vein yellowing and leaf yellowing followed by severe chlorosis and stunting as the disease progressed. These symptoms were similar to the viral infection. The disease incidence varied from 0 to 100% in the selected fields and 71.88% of the fields in Minuwangoda area were affected. Disease severity in the selected fields ranged from 0 to 6, while the average disease severity of the fields in the area was 1.3. To determine whether the causal agent is a commonly reported virus of the family Begomoviridae, coat protein (CP) gene was amplified from the DNA extracted from infected leaves using CP specific primers and the sequencing was done using the Sanger sequencing method. Sequence alignment with the NCBI database showed a 95% similarity to Chilli leaf curl virus (Begomoviridae) isolate CL-14 from Nochchiyagama. Results indicates that Sri Lankan C. frutescens cultivation could be challenged by the viral infection and control measures should be implemented as soon as possible.